PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01632.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 188aa    MW: 21304.5 Da    PI: 6.0176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01632.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.47.7e-253310756127
                      NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                                wyfFs r ++y++ ++++r+t sgyWk tgk+ +v+++   +++ +g kktLvf +g++p+ge+t+W+mhey+
  Rsa1.0_01632.1_g00016.1  33 LAWYFFSDRGSRYRNTNKQSRTTPSGYWKITGKTAQVKERssgSHHSIGFKKTLVFLTGKSPHGERTNWIMHEYS 107
                              489***********************************998777777***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.5721126IPR003441NAC domain
PfamPF023657.1E-1420107IPR003441NAC domain
SuperFamilySSF1019417.19E-2832126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSLDCVLYLT YLGLCKMLEP NRECFNRGGN WDLAWYFFSD RGSRYRNTNK QSRTTPSGYW  60
KITGKTAQVK ERSSGSHHSI GFKKTLVFLT GKSPHGERTN WIMHEYSNLS SPEEITSHVV  120
CKVEYTGPAD SLQIAGESTS ERTAESLQIA GESTSERPAK SLQIANEDGY SDSYWEGNTN  180
EDWDTYLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D9e-172012366165NAC domain-containing protein 19
3swp_C9e-172012366165NAC domain-containing protein 19
3swp_B9e-172012366165NAC domain-containing protein 19
3swp_A9e-172012366165NAC domain-containing protein 19
3swm_D9e-172012366165NAC domain-containing protein 19
3swm_C9e-172012366165NAC domain-containing protein 19
3swm_B9e-172012366165NAC domain-containing protein 19
3swm_A9e-172012366165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864281.13e-33hypothetical protein ARALYDRAFT_357630
TrEMBLD7MTJ93e-33D7MTJ9_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80014171e-32(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2893923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.21e-23NAC with transmembrane motif1